Apr. 22, 2020
Gaps in the supply of coronavirus tests are propelling initiatives to fill them across the country. At the Georgia Institute of Technology, bioscience researchers are burning the midnight oil to produce key components for tests in the state of Georgia.
The goal is to supply a broad initiative by the governor’s office involving multiple universities and partners to rapidly produce and administer more tests. At least 35 volunteers at Georgia Tech, while adhering to social distancing, are reorienting labs normally used for scientific discovery to do larger-scale production of biochemical components.
“We are inventing new ways of doing things like an electronic buddy system so people can be alone – but not alone – while they work in the lab. The technical part is actually the easiest. The logistics of testing, data security, and regulatory considerations – those things are more challenging,” said Loren Williams, a professor in Georgia Tech’s School of Chemistry and Biochemistry.
Williams and the researchers are supporting Georgia Governor Brian Kemp’s COVID-19 State Lab Surge Capacity Task Force, which is a project managed through the Georgia Tech Research Institute (GTRI). GTRI is also leading the coordination and integration of data management across the lab surge effort.
“We are providing technical and project management of the effort which is focused on increasing the state’s ability to expand testing beyond current limitations,” said Mike Shannon, GTRI’s lead in the project and a principal research engineer at GTRI.
Exoplanets and coronavirus
The science behind coronavirus testing is complementary to the researchers’ usual work. That includes understanding proteins associated with glaucoma, figuring out how RNA and DNA evolved in the first place, or whether ribosomes – lumps of RNA and protein key to translating genetic code into life – may exist on exoplanets.
Williams’ research team studies the last topic, and some of their work is related to the core of coronavirus testing, a chemical reaction that amplifies the virus’ genetic fingerprint. It is called a reverse transcription polymerase chain reaction (RT-PCR), and it transcribes trace amounts of coronavirus’ RNA code into ample amounts of corresponding DNA in the lab for easy analysis.
“His lab members are very familiar with RT-PCR, and when the lack of tests became apparent, they swung into action. The group grew from there, based on the technical needs for the project,” said Raquel Lieberman, another leading scientist in the effort and also a professor in Georgia Tech’s School of Chemistry and Biochemistry.
“Every day, very talented, hardworking people with perfect skill sets come out of the woodwork and ask to help,” Williams said.
The group has teams that engineer the production of enzymes or other chemicals needed for RT-PCR to work: Two central enzymes are reverse transcriptase, which converts RNA to DNA and Taq polymerase, which rapidly replicates DNA. Another important component is ribonuclease inhibitor, which slows coronavirus RNA decay.
Global COVID allies
Other researchers develop processes for mass production or implementation of COVID-19 safety procedures; the list goes on. Some colleagues telework; others work in labs but spaced far from each other while they wear masks.
“The group is planning to produce enough enzyme components for hundreds of tests per day,” said Vinayah Agarwal, an assistant professor in Georgia Tech’s School of Chemistry and Biochemistry and School of Biological Sciences. “Using these components, we will also build cheaper and more robust testing kits going forward.”
Instructions already exist for some of the ingredients for the test, but they are not readily available because the rights to them are exclusive.
“Intellectual property and other proprietary issues hinder our effort,” Lieberman said. “But we have received help from scientists all over the world to piece together protocols on how to make what we need.”
The state wants to increase current testing capacities by 3,000 more tests per day. The task force also includes teams from Augusta University Health System, Georgia State University, Emory University, University of Georgia, and the Georgia Public Health Laboratory. The task force lead is Captain Kevin Caspary who is with the Georgia National Guard.
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Also read this: Interactive COVID-19 tool shows the importance of staying at home
External News Coverage:
NPR - Sun Rays, Disinfectants And False Hopes: Misinformation Litters The Road To Reopening
News-Medical.Net - Georgia Tech researchers create key components for COVID-19 tests
Georgia Tech News Center- A New Normal: Researchers Across Georgia Tech Rally to Fight COVID-19
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Writer & Media Representative: Ben Brumfield (404-272-2780), email: ben.brumfield@comm.gatech.edu
Georgia Institute of Technology
Apr. 15, 2020
During a stroll, a woman’s breathing becomes a slight bit shallower, and a monitor in her clothing alerts her to get a telemedicine check-up. A new study details how a sensor chip smaller than a ladybug records multiple lung and heart signals along with body movements and could enable such a future socially distanced health monitor.
The core mechanism of the chip developed by researchers at the Georgia Institute of Technology involves two finely manufactured layers of silicon, which overlay each other separated by the space of 270 nanometers – about 0.000001 inches. They carry a minute voltage.
Vibrations from bodily motions and sounds put part of the chip in very slight motion, making the voltage flux, thus creating readable electronic outputs. In human testing, the chip has recorded a variety of signals from the mechanical workings of the lungs and the heart with clarity, signals that often escape meaningful detection by current medical technology.
“Right now, medicine looks to EKGs (electrocardiograms) for information on the heart, but EKGs only measure electrical impulses. The heart is a mechanical system with muscles pumping and valves opening and shutting, and it sends out a signature of sounds and motions, which an EKG does not detect. EKGs also say nothing about lung function,” said Farrokh Ayazi, Ken Byers Professor in Georgia Tech’s School of Electrical and Computer Engineering.
Stethoscope-accelerometer combo
The chip, which acts as an advanced electronic stethoscope and accelerometer in one, is aptly called an accelerometer contact microphone. It detects vibrations that enter the chip from inside the body while keeping out distracting noise from outside the body's core like airborne sounds
“If it rubs on my skin or shirt, it doesn’t hear the friction, but the device is very sensitive to sounds coming at it from inside the body, so it picks up useful vibrations even through clothing,” Ayazi said.
The detection bandwidth is enormous - from broad, sweeping motions to inaudibly high-pitched tones. Thus, the sensor chip records all at once fine details of the heartbeat, waves the heart sends through the body, and respiration rates and lung sounds. It even tracks the wearer’s physical activities such as walking.
The signals are recorded in sync, potentially offering the big picture of a patient’s heart and lung health. For the study, the researchers successfully recorded a “gallop,” a faint third sound after the “lub-dub” of the heartbeat. Gallops are normally elusive clues of heart failure.
The researchers published their results in the journal npj Digital Medicine on February 12, 2020. The research was funded by the Georgia Research Alliance, the Defense Advanced Research Projects Agency (DARPA), the National Science Foundation, and the National Institutes of Health. Study coauthor Divya Gupta, M.D., a cardiologist at Emory University, collaborated in testing the chip on human participants.
Hermetically sealed vacuum
Medical research has tried to make better use of the body’s mechanical signals for decades but recording some – like waves traversing multiple tissues – has proven inconsistent, while others – like gallops – have relied upon clinician skills influenced by human error. The new chip produces high-resolution, quantified data that future research could match to pathologies in order to identify them.
“We are working already to collect significantly more data matched with pathologies. We envision algorithms in the future that may enable a broad array of clinical readings,” Ayazi said.
Though the chip’s main engineering principle is simple, making it work and then manufacturable took Ayazi’s lab ten years, mainly because of the Lilliputian scale of the gap between the silicon layers, i.e. electrodes. If the 2-millimeter by 2-millimeter sensor chip were expanded to the size of a football field, that air gap would be about an inch wide.
“That very thin gap separating the two electrodes cannot have any contact, not even by forces in the air in between the layers, so the whole sensor is hermetically sealed inside a vacuum cavity,” Ayazi said. “This makes for that ultralow signal noise and breadth of bandwidth that are unique.”
Detects through clothing
The researchers used a manufacturing process developed in Ayazi’s lab called the HARPSS+ platform (High Aspect Ratio Poly and Single Crystalline Silicon) for mass production, running off hand-sized sheets that were then cut into the tiny sensor chips. HARPSS+ is the first reported mass manufacturing process that achieves such consistently thin gaps, and it has enabled high-throughput manufacturing of many such advanced MEMS, or microelectromechanical systems.
The experimental device is currently battery-powered and uses a second chip called a signal-conditioning circuit to translate the sensor chip’s signals into patterned read-outs.
Three sensors or more could be inserted into a chest band that would triangulate health signals to locate their sources. Someday a device may pinpoint an emerging heart valve flaw by turbulence it produces in the bloodstream or identify a cancerous lesion by faint crackling sounds in a lung.
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These researchers co-authored the study: Pranav Gupta (first author), Mohammad Moghimi, Yaesuk Jeong and Omer Inan from Georgia Tech. The research was funded by the Georgia Research Alliance, the Defense Advanced Research Projects Agency (DARPA) Technology Office’s Advanced Inertial Micro Sensors program (contract # N66001-16-1-4064), and by the National Science Foundation/National Institutes of Health Smart and Connected Health Program (grant # R01 EB023808). The team’s work with human subjects was approved by Emory University and Georgia Institute of Technology Institutional Review Boards (IRB# H18248). Any findings, conclusions or recommendations are those of the authors and not necessarily of the sponsors.
Writer & Media Representative: Ben Brumfield (404-272-2780), email: ben.brumfield@comm.gatech.edu
Georgia Institute of Technology
Apr. 13, 2020
Georgia Tech Arts is still seeking projects for the 2021 ACCelerate: ACC Smithsonian
Creativity and Innovation Festival in Washington, DC. All Georgia Tech students, faculty, and staff are invited to apply by May 1, 2020.
Even if you do not have a finished project exploring the intersection of science,
engineering, art, design, and technology, we encourage you to speak with Es
Famojure at esther.famojure@arts.gatech.edu about your concepts.
Learn about Georgia Tech's 2019 participants for some inspiration.
The festival brings together all institutions included in the Atlantic Coast Conference to
celebrate creativity and innovation with a specific focus on science, engineering, arts, and
design. It will be held April 9 -11, 2021 at the Smithsonian National Museum of American
History.
Submit your project for consideration by May 1, 2020 to be considered.
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Feb. 11, 2020
Four Georgia Institute of Technology faculty members have been elected as new members of the National Academy of Engineering (NAE). Marilyn Brown, Thomas Kurfess, Susan Margulies, and Alexander Shapiro join 83 other new NAE members for 2020 when they are formally inducted during a ceremony at the academy’s annual meeting on Oct. 4 in Washington, D.C.
Election of new NAE members, the culmination of a yearlong process, recognizes individuals who have made outstanding contributions to "engineering research, practice, or education, including, where appropriate, significant contributions to the engineering literature" and to "the pioneering of new and developing fields of technology, making major advancements in traditional fields of engineering, or developing/implementing innovative approaches to engineering education."
“It’s the honor of a lifetime to be recognized by the National Academy of Engineering for the impact we’ve have on understanding lung injuries in the critical care unit and traumatic brain injuries in children,” said Margulies, chair of the Wallace H. Coulter Department of Biomedical Engineering at Georgia Tech and Emory University and, with Brown and Elsa Reichmanis (elected in 1995), one of just three women on the Georgia Tech faculty accorded NAE membership – one of the highest professional distinctions an engineer can receive.
“Our work is deeply collaborative, and I am grateful to the engineers, scientists, physicians, and patients who are partners in our journey,” Margulies added.
Margulies, a researcher in the Petit Institute for Bioengineering and Bioscience at Tech and a Georgia Research Alliance Eminent Scholar in Injury Biomechanics at Emory, was elected, “for elaborating the traumatic injury thresholds of brain and lung in terms of structure-function mechanisms,” according to the NAE announcement.
Using an integrated biomechanics approach, Margulies’ research program spans the micro-to-macro scales in two distinct areas, traumatic brain injury and ventilator-induced lung injury. Her work has generated new knowledge about the structural and functional responses of the brain and lungs to their mechanical environment. Margulies came to Georgia Tech in 2017 from the University of Pennsylvania, where she’d been a professor of bioengineering, and had earned her Master of Science in Engineering and Ph.D. in Bioengineering.
Brown is Regents and Brook Byers Professor of Sustainable Systems in the School of Public Policy. Her deep expertise in climate and energy policy helped shape numerous reports for the Intergovernmental Panel on Climate Change, including one that led to the organization receiving the Nobel Peace Prize in 2007.
She joined Georgia Tech in 2006 after a career at the U.S. Department of Energy's Oak Ridge National Laboratory, where she led several national climate change mitigation studies and became a leader in the analysis and interpretation of energy futures in the United States. Her research at Tech focuses on the design and impact of policies aimed at accelerating the development and deployment of sustainable energy technologies, emphasizing the electric utility industry. She was elected to NAE “for bridging engineering, social and behavioral sciences, and policy studies to achieve cleaner electric energy.”
Brown, who earned her Ph.D. at the Ohio State University, co-founded and chaired the Southeast Energy Efficiency Alliance, served two terms as a presidential appointee on the board of the Tennessee Valley Authority – the nation’s largest public power provider – and also served two terms on the U.S. Department of Energy’s Electricity Advisory Committee, where she led the Smart Grid Subcommittee.
“The most rewarding feature of my career has been working toward solutions with colleagues across disciplines,” Brown said.
Shapiro is the Russell Chandler III Chair and professor in the H. Milton Stewart School of Industrial and Systems Engineering, where his research is focused on stochastic programming, risk analysis, simulation-based optimization, and multivariate statistical analysis.
In 2013, he was awarded the INFORMS Khachiyan Prize for lifetime achievements in optimization. He received the 2018 Dantzig Prize from the Mathematical Optimization Society and the Society for Industrial and Applied Mathematics.
Since earning his Ph.D. in applied mathematics-statistics from Israel’s Ben-Gurion University of the Negev in 1981, Shapiro has made substantial contributions to the fields of optimization and large-scale, stochastic programming, and he was elected to NAE “for contributions to the theory, computation, and application of stochastic programming.”
Kurfess is professor and HUSCO/Ramirez Distinguished Chair in Fluid Power and Motion Control in the George W. Woodruff School of Mechanical Engineering, where he has helped guide the evolution of technology as a pioneer in the digital transformation of manufacturing.
Improving manufacturing technology is a pursuit that has roots in his childhood. “I grew up in my father’s machine shop,” said Kurfess, who has a special fondness for mom-and-pop operations. He was elected by the NAE “for development and implementation of innovative digital manufacturing technologies and system architectures.”
“I’m proud that the work we do has a positive impact on small and medium-sized enterprises, which are about 99% of the manufacturing operations, as well as large operations,” said Kurfess, who earned all of his degrees at MIT. “Our work targets people who are implementing the digital thread in manufacturing, and what the digital thread will do is make sure those smaller enterprises, those mom and pops, can have access to the latest and greatest technologies.”
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